Polyubiquitin-C
UniProt P0CG48 · gene UBC · Homo sapiens · 685 residues
505evidence items
420mapped to a state
1states
10techniques
6sources
0conflicts
Coverage grid
Mapped evidence per state and technique. Shaded rows rest on a single technique. Badge = best data level in the cell: raw (traces, images, FIDs: can be re-analysed), proc (maps, curves, tables, trajectories) or rep (values in the paper only).
| State | Basis | xray | cryoem | nmr_structure | nmr_dynamics | nmr_shifts | saxs_sans | force_spectroscopy | integrative | af_prediction | md | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| folded (native) Ub-folded | observed | proc 232 | proc 93 | proc 53 | proc 3 | proc 31 | proc 5 | · | · | proc 1 | proc 2 | 420 |
Unmapped evidence: 85 of 505 items. Mappings come from curator assignments and curated rules; see About for how rules work.
Sources
| Source | Evidence | Mapped |
|---|---|---|
| AlphaFold DB | 1 | 1 |
| BMRB | 39 | 34 |
| MDDB | 2 | 2 |
| RCSB PDB | 380 | 378 |
| SASBDB | 15 | 5 |
| SMASH-BIO | 68 | 0 |
Curated rules applied
ub-af-folded: 1 itemsub-md-folded: 2 itemsub-nmr-folded: 34 itemsub-saxs-folded: 5 itemsub-structures-folded: 377 items
Structure
Choose a state. Each model is badged observed or inferred; assumptions are one click away.
States and transitions
| State | Basis | Parent | Description |
|---|---|---|---|
| folded (native) Ub-folded | observed | — | Native globular fold, as in 1UBQ. Ensemble states from NMR dynamics are not yet in the pilot. |
No transitions recorded in this version (no rate or free-energy evidence has been curated yet).
Evidence
One row per deposit or experiment. Filter by technique, environment or text. Unmapped evidence is listed too.
| Evidence | Technique | Observable | Conditions | Mapped to state |
|---|---|---|---|---|
| EV-PDB-2KX0-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 the solution structure of UBB+1, frameshift mutant of ubiquitin B · ubiquitin B (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2KN5-1 RCSB PDB | nmr_structure | structure | in vitro · 34.85 °C · pH 6.5 A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2KLG-1 RCSB PDB | nmr_structure | structure | in vitro · 29.85 °C · pH 6.5 PERE NMR structure of ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2KJH-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.4 NMR based structural model of the UBCH8-UBIQUITIN complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2KHW-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 Solution Structure of the human Polymerase iota UBM2-Ubiquitin Complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2KDF-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 NMR structure of minor S5a (196-306):K48 linked diubiquitin species · Ubiquitin (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2K8C-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution structure of PLAA family ubiquitin binding domain (PFUC) trans isomer in complex with ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2K8B-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution structure of PLAA family ubiquitin binding domain (PFUC) cis isomer in complex with ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2K6D-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.4 CIN85 Sh3-C domain in complex with ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2K25-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 Automated NMR Structure of the UBB by FAPSY · UBB (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2JZZ-1 RCSB PDB | nmr_structure | structure | in vitro · -3.15 °C Solid-State NMR Structure of Microcrystalline Ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2JY6-1 RCSB PDB | nmr_structure | structure | in vitro · 22.85 °C · pH 6.8 Solution structure of the complex of ubiquitin and ubiquilin 1 UBA domain · Ubiquitin protein (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2JRI-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule. · UBC protein (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2JF5-1 RCSB PDB | xray | resolution: 1.95 Å | in vitro · -173.15 °C · pH 7.5 · ligands CD, CL, CO, MG crystal structure of Lys63-linked di-ubiquitin · UBIQUITIN (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2J7Q-2 RCSB PDB | xray | resolution: 1.8 Å | in vitro · -173.15 °C · pH 7.5 · ligands GOL, GVE, MG, PG4 Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein M48 in complex with a ubquitin-based suicide substrate · UBIQUITIN (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2IBI-2 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · pH 9 · ligands NEH, ZN Covalent Ubiquitin-USP2 Complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2HTH-1 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -173.15 °C · pH 7.5 Structural basis for ubiquitin recognition by the human EAP45/ESCRT-II GLUE domain · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GMI-3 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -173.15 °C · pH 6.2 Mms2/Ubc13~Ubiquitin · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GBR-1 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · pH 3.9 · ligands CD Crystal Structure of the 35-36 MoaD Insertion Mutant of Ubiquitin · Ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GBN-1 RCSB PDB | xray | resolution: 1.6 Å | in vitro · -173.15 °C · pH 5.5 Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GBM-1 RCSB PDB | xray | resolution: 1.55 Å | in vitro · -173.15 °C · pH 5.5 · ligands ARS Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin · Ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GBK-1 RCSB PDB | xray | resolution: 1.99 Å | in vitro · -173.15 °C · pH 5.9 Crystal Structure of the 9-10 MoaD Insertion Mutant of Ubiquitin · Ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2GBJ-1 RCSB PDB | xray | resolution: 1.35 Å | in vitro · -173.15 °C · pH 5.9 Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin. · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2G45-2 RCSB PDB | xray | resolution: 1.99 Å | in vitro · -173.15 °C · pH 6.5 · ligands CL, ZN Co-crystal structure of znf ubp domain from the deubiquitinating enzyme isopeptidase T (isot) in complex with ubiquitin · Ubiquitin (chains B,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2FUH-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 Solution Structure of the UbcH5c/Ub Non-covalent Complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2DEN-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin · Polyubiquitin-B (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2BGF-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.8 NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data · DI-UBIQUITIN (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2AYO-2 RCSB PDB | xray | resolution: 3.5 Å | in vitro · -173.15 °C · pH 8 Structure of USP14 bound to ubquitin aldehyde · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1ZGU-2 RCSB PDB | nmr_structure | structure | in vitro · 19.85 °C · pH 7.5 Solution structure of the human Mms2-Ubiquitin complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1YX6-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution Structure of S5a UIM-2/Ubiquitin Complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1YX5-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Solution Structure of S5a UIM-1/Ubiquitin Complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1XQQ-1 RCSB PDB | nmr_structure | structure | in vitro Simultaneous determination of protein structure and dynamics · ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1XD3-2 RCSB PDB | xray | resolution: 1.45 Å | in vitro · -163.15 °C · pH 8.5 · ligands GVE, MG Crystal structure of UCHL3-UbVME complex · UBC protein (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1UD7-1 RCSB PDB | nmr_structure | structure | in vitro · 29.85 °C · pH 5.8 SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7 · PROTEIN (UBIQUITIN CORE MUTANT 1D7) (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1UBQ-1 RCSB PDB | xray | resolution: 1.8 Å | in vitro STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION · UBIQUITIN (chains A) | folded (native) · curator:draft (unreviewed) · high Native ubiquitin fold at 1.8 Å; representative for the folded state. |
| EV-PDB-1UBI-1 RCSB PDB | xray | resolution: 1.8 Å | in vitro SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1 · UBIQUITIN (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1TBE-1 RCSB PDB | xray | resolution: 2.4 Å | in vitro STRUCTURE OF TETRAUBIQUITIN SHOWS HOW MULTIUBIQUITIN CHAINS CAN BE FORMED · TETRAUBIQUITIN (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1SIF-1 RCSB PDB | xray | resolution: 2.18 Å | in vitro · -173.15 °C · pH 5.6 Crystal structure of a multiple hydrophobic core mutant of ubiquitin · ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1S1Q-2 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · pH 4.6 · ligands ACY, CU, SO4 TSG101(UEV) domain in complex with Ubiquitin · ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1Q5W-2 RCSB PDB | nmr_structure | structure | in vitro · 17.85 °C · pH 5.5 · ligands ZN Ubiquitin Recognition by Npl4 Zinc-Fingers · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1OGW-1 RCSB PDB | xray | resolution: 1.32 Å | in vitro · -163.15 °C · pH 5.6 Synthetic Ubiquitin with fluoro-Leu at 50 and 67 · UBIQUITIN (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1NBF-2 RCSB PDB | xray | resolution: 2.3 Å | in vitro · -173.15 °C · pH 5.5 Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde · Ubiquitin aldehyde (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1GJZ-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 Solution structure of a dimeric N-terminal fragment of human ubiquitin · UBIQUITIN (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1G6J-1 RCSB PDB | nmr_structure | structure | in vitro · 19.85 °C STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSE MICELLES · UBIQUITIN (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1FXT-2 RCSB PDB | nmr_structure | structure | in vitro · -243.15 °C · pH 7.5 STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTER COMPLEX · UBIQUITIN (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1F9J-1 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -183.15 °C · pH 4.5 STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN · TETRAUBIQUITIN (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1D3Z-1 RCSB PDB | nmr_structure | structure | in vitro · 34.85 °C · pH 6.5 UBIQUITIN NMR STRUCTURE · PROTEIN (UBIQUITIN) (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1CMX-2 RCSB PDB | xray | resolution: 2.25 Å | in vitro · -173.15 °C · pH 4.5 STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C-TERMINAL HYDROLASES · PROTEIN (UBIQUITIN YUH1-UBAL) (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-1C3T-1 RCSB PDB | nmr_structure | structure | in vitro · 29.85 °C · pH 5.8 ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY · PROTEIN (1D8 UBIQUITIN) (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-11SY-2 RCSB PDB | cryoem | resolution: 4.28 Å | in vitro · ligands ZN Cryo-EM structure of substrate engaged p97-Ufd1-NPL4-Faf1 complex (NPL4 focused) · Ubiquitin (chains H,I,J,K) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2L3Z-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 4.1 Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2LD9-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2LVO-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.2 Structure of the gp78CUE domain bound to monubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2LVQ-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.2 gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2LZ6-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6 Distinct ubiquitin binding modes exhibited by sh3 domains: molecular determinants and functional implications · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MBO-1 RCSB PDB | nmr_structure | structure | in vitro · 22.85 °C · pH 6.8 K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MI8-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.2 Solution structure of lysine-free (K0) ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MOR-1 RCSB PDB | nmr_structure | structure | in vitro · 18.85 °C · pH 6.6 A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MRE-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 · ligands ZN NMR structure of the Rad18-UBZ/ubiquitin complex · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2NR2-1 RCSB PDB | nmr_structure | structure | in vitro The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2OJR-1 RCSB PDB | xray | resolution: 2.6 Å | in vitro · -173.15 °C · pH 7.5 · ligands TB Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2RR9-1 RCSB PDB | nmr_structure | structure | in vitro · 36.85 °C · pH 6.8 The solution structure of the K63-Ub2:tUIMs complex · ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2RU6-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.2 The pure alternative state of ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2WDT-2 RCSB PDB | xray | resolution: 2.3 Å | in vitro · -173.15 °C · pH 5.5 · ligands CL Crystal structure of Plasmodium falciparum UCHL3 in complex with the suicide inhibitor UbVME · UBIQUITIN (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2XEW-1 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · pH 3.5 · ligands CL, EDO, FLC Crystal structure of K11-linked diubiquitin · UBIQUITIN (chains A,B,C,D,E,F,G,H,I,J,K,L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2Z59-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.5 Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2ZVO-1 RCSB PDB | xray | resolution: 2.9 Å | in vitro · -173.15 °C NEMO CoZi domain in complex with diubiquitin in C2 space group · UBC protein (chains A,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3A33-2 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -178.15 °C · pH 4.1 · ligands GOL UbcH5b~Ubiquitin Conjugate · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3AUL-1 RCSB PDB | xray | resolution: 2.39 Å | in vitro · -173.15 °C · pH 6 Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation · Polyubiquitin-C (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3B08-1 RCSB PDB | xray | resolution: 1.701 Å | in vitro · -173.15 °C · pH 7.5 · ligands ZN, branched: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin · Polyubiquitin-C (chains A,D,G,J) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3B0A-1 RCSB PDB | xray | resolution: 1.9 Å | in vitro · -173.15 °C · pH 7 · ligands TAM, ZN Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin · Polyubiquitin-C (chains A,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3BY4-2 RCSB PDB | xray | resolution: 1.55 Å | in vitro · -173.15 °C · pH 6.5 · ligands 3CN Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3C0R-2 RCSB PDB | xray | resolution: 2.315 Å | in vitro · -173.15 °C · pH 6.5 · ligands 3CN Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3DVN-4 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -173.15 °C · pH 7.3 Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin · Ubiquitin (chains V,Y) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3DVN-3 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -173.15 °C · pH 7.3 Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin · Ubiquitin D77 (chains U,X) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3EEC-1 RCSB PDB | xray | resolution: 3 Å | in vitro · -173.15 °C · pH 7 · ligands CD X-ray structure of human ubiquitin Cd(II) adduct · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3H7P-2 RCSB PDB | xray | resolution: 1.9 Å | in vitro · -173.15 °C · pH 5.2 · ligands CD Crystal structure of K63-linked di-ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3H7P-1 RCSB PDB | xray | resolution: 1.9 Å | in vitro · -173.15 °C · pH 5.2 · ligands CD Crystal structure of K63-linked di-ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3H7S-1 RCSB PDB | xray | resolution: 2.3 Å | in vitro · -173.15 °C · pH 5.2 · ligands ZN Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3HM3-1 RCSB PDB | xray | resolution: 1.96 Å | in vitro · -173.15 °C · pH 4.6 · ligands ZN The Structure and conformation of Lys-63 linked tetra-ubiquitin · Ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3IFW-2 RCSB PDB | xray | resolution: 2.4 Å | in vitro · -173.15 °C · pH 9 · ligands GVE Crystal structure of the S18Y variant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester. · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3IHP-2 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · pH 6.5 · ligands CL, NEH, ZN Covalent Ubiquitin-Usp5 Complex · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3JVZ-3 RCSB PDB | xray | resolution: 3.3 Å | in vitro · pH 5.1 E2~Ubiquitin-HECT · Ubiquitin (chains X,Y) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3JW0-3 RCSB PDB | xray | resolution: 3.1 Å | in vitro · pH 5.1 E2~Ubiquitin-HECT · Ubiquitin (chains X,Y) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3K9O-2 RCSB PDB | xray | resolution: 1.8 Å | in vitro · -173.15 °C · pH 8.5 The crystal structure of E2-25K and UBB+1 complex · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3KVF-2 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · pH 9 · ligands GVE Crystal structure of the I93M mutant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3JSV-2 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -183.15 °C · pH 7 Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3JSV-1 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -183.15 °C · pH 7 Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3EHV-1 RCSB PDB | xray | resolution: 1.81 Å | in vitro · -173.15 °C · pH 7 · ligands ZN X-ray structure of human ubiquitin Zn(II) adduct · Ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3EFU-1 RCSB PDB | xray | resolution: 1.84 Å | in vitro · -173.15 °C · pH 7 · ligands HG X-ray structure of human ubiquitin-Hg(II) adduct · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3ALB-1 RCSB PDB | xray | resolution: 1.85 Å | in vitro · -173.15 °C · pH 4.6 · ligands SO4 Cyclic Lys48-linked tetraubiquitin · ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2ZVN-1 RCSB PDB | xray | resolution: 3 Å | in vitro · -173.15 °C NEMO CoZi domain incomplex with diubiquitin in P212121 space group · UBC protein (chains A,C,E,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2ZCB-1 RCSB PDB | xray | resolution: 1.6 Å | in vitro · -173.15 °C · pH 6.3 · ligands ZN Crystal Structure of ubiquitin P37A/P38A · Ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2W9N-1 RCSB PDB | xray | resolution: 2.25 Å | in vitro · -173.15 °C · pH 7 · ligands CL, ZN crystal structure of linear di-ubiquitin · UBIQUITIN (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2PEA-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.8 NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2PE9-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.8 NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2O6V-3 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -150.15 °C · pH 6.5 · ligands MES, SO4 Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH · Ubiquitin (chains D,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2O6V-2 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -150.15 °C · pH 6.5 · ligands MES, SO4 Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH · Ubiquitin (chains B,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2O6V-1 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -150.15 °C · pH 6.5 · ligands MES, SO4 Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH · Ubiquitin (chains A,C,E,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2N2K-2 RCSB PDB | nmr_structure | structure | in vitro · 29.85 °C · pH 6 · ligands MTN Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand · ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2N2K-1 RCSB PDB | nmr_structure | structure | in vitro · 29.85 °C · pH 6 · ligands MTN Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand · ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MWS-1 RCSB PDB | nmr_structure | structure | in vitro · 22.85 °C · pH 6.8 Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MJ5-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.6 Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MCN-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6 Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2MBQ-1 RCSB PDB | nmr_structure | structure | in vitro · 22.85 °C · pH 6.8 K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-2LVP-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.2 gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3KW5-2 RCSB PDB | xray | resolution: 2.83 Å | in vitro · -173.15 °C · pH 9 · ligands GVE Crystal structure of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3LDZ-1 RCSB PDB | xray | resolution: 2.6 Å | in vitro · pH 8 Crystal structure of human STAM1 VHS domain in complex with ubiquitin · Ubiquitin (chains E,F,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3MHS-4 RCSB PDB | xray | resolution: 1.89 Å | in vitro · -173.15 °C · pH 6.5 · ligands EDO, GOL, ZN Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3MTN-2 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -173.15 °C · pH 5.3 · ligands CL, GOL, ZN Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor · UBIQUITIN VARIANT UBV.21.4 (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3N3K-2 RCSB PDB | xray | resolution: 2.6 Å | in vitro · -173.15 °C · pH 6.3 · ligands ZN The catalytic domain of USP8 in complex with a USP8 specific inhibitor · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3OFI-2 RCSB PDB | xray | resolution: 2.35 Å | in vitro · -173.15 °C · pH 7 · ligands DIO, ZN Crystal structure of human insulin-degrading enzyme in complex with ubiquitin · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3ONS-1 RCSB PDB | xray | resolution: 1.8 Å | in vitro · -173.15 °C · pH 4.2 Crystal structure of Human Ubiquitin in a new crystal form · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3PRM-2 RCSB PDB | xray | resolution: 2.3 Å | in vitro · -173.15 °C · pH 6.5 Structural analysis of a viral OTU domain protease from the Crimean-Congo Hemorrhagic Fever virus in complex with human ubiquitin · Polyubiquitin-B (Fragment) (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3PT2-2 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -173.15 °C · pH 5.5 · ligands 4LJ, ACT, SO4 Structure of a viral OTU domain protease bound to Ubiquitin · Ubiquitin B (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3PTF-2 RCSB PDB | xray | resolution: 2.7 Å | in vitro · -180.15 °C · pH 8.5 X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin · Polyubiquitin-B (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3Q3F-1 RCSB PDB | xray | resolution: 2.169 Å | in vitro · -173.15 °C · pH 8 · ligands SO4 Engineering Domain-Swapped Binding Interfaces by Mutually Exclusive Folding: Insertion of Ubiquitin into position 103 of Barnase · Ribonuclease/Ubiquitin chimeric protein (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3RUL-1 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -180.15 °C · ligands CL, M12, MAN, N1L, TLA New strategy to analyze structures of glycopeptide-target complexes · Ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3TMP-2 RCSB PDB | xray | resolution: 1.91 Å | in vitro · -173.15 °C · pH 5.8 The catalytic domain of human deubiquitinase DUBA in complex with ubiquitin aldehyde · Polyubiquitin-C (chains B,D,F,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3U30-1 RCSB PDB | xray | resolution: 2.428 Å | in vitro · -173.15 °C · pH 6 Crystal structure of a linear-specific Ubiquitin fab bound to linear ubiquitin · linear di-ubiquitin (chains A,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3UGB-2 RCSB PDB | xray | resolution: 2.35 Å | in vitro · -160.15 °C · pH 7 · ligands GOL UbcH5c~Ubiquitin Conjugate · Polyubiquitin-C (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3V6C-2 RCSB PDB | xray | resolution: 1.7 Å | in vitro · -173.15 °C · pH 7 · ligands CL, GOL, ZN Crystal Structure of USP2 in complex with mutated ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3V6E-2 RCSB PDB | xray | resolution: 2.1 Å | in vitro · -173.15 °C · pH 7 · ligands CL, GOL, ZN Crystal Structure of USP2 and a mutant form of Ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3VUW-1 RCSB PDB | xray | resolution: 1.95 Å | in vitro · -173.15 °C · pH 8 · ligands K, ZN Crystal structure of A20 ZF7 in complex with linear ubiquitin, form I · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3VUX-1 RCSB PDB | xray | resolution: 1.699 Å | in vitro · -173.15 °C · pH 8 · ligands EDO, K, ZN Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3VUY-1 RCSB PDB | xray | resolution: 1.981 Å | in vitro · -173.15 °C · pH 8 · ligands K, ZN Crystal structure of A20 ZF7 in complex with linear tetraubiquitin · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3ZNI-4 RCSB PDB | xray | resolution: 2.21 Å | in vitro · -173.15 °C · ligands CA, EDO, ZN Structure of phosphoTyr363-Cbl-b - UbcH5B-Ub - ZAP-70 peptide complex · POLYUBIQUITIN-C (chains D,H,L,P) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3ZNZ-2 RCSB PDB | xray | resolution: 1.9 Å | in vitro · 13.85 °C · pH 6.5 · ligands SO4 Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin · POLYUBIQUITIN-C (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4AP4-3 RCSB PDB | xray | resolution: 2.21 Å | in vitro · -173.15 °C · pH 7.2 · ligands ZN Rnf4 - ubch5a - ubiquitin heterotrimeric complex · UBIQUITIN C (chains C,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4BOS-3 RCSB PDB | xray | resolution: 2.35 Å | in vitro · 13.85 °C · ligands MG, NO3 Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide · OTUD2 (chains F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4BOS-2 RCSB PDB | xray | resolution: 2.35 Å | in vitro · 13.85 °C · ligands MG, NO3 Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide · POLYUBIQUITIN-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4BOZ-2 RCSB PDB | xray | resolution: 3.03 Å | in vitro · 13.85 °C · ligands GOL Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin · UBIQUITIN-C (chains B,C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DDI-2 RCSB PDB | xray | resolution: 3.802 Å | in vitro · -173.15 °C · pH 8 Crystal structure of human OTUB1/UbcH5b~Ub/Ub · Polyubiquitin-C (chains D,E,F,G,H,I) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DHJ-3 RCSB PDB | xray | resolution: 2.35 Å | in vitro · -173.15 °C · pH 6.5 The structure of a ceOTUB1 ubiquitin aldehyde UBC13~Ub complex · Ubiquitin (chains D,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DHJ-2 RCSB PDB | xray | resolution: 2.35 Å | in vitro · -173.15 °C · pH 6.5 The structure of a ceOTUB1 ubiquitin aldehyde UBC13~Ub complex · Ubiquitin aldehyde (chains B,F,J,M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DHZ-3 RCSB PDB | xray | resolution: 3.11 Å | in vitro · -173.15 °C · pH 6.5 The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub · Ubiquitin (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DHZ-2 RCSB PDB | xray | resolution: 3.11 Å | in vitro · -173.15 °C · pH 6.5 The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub · Ubiquitin aldehyde (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4FJV-2 RCSB PDB | xray | resolution: 2.047 Å | in vitro · -173.15 °C · pH 8 · ligands GOL, NEH Crystal Structure of Human Otubain2 and Ubiquitin Complex · Polyubiquitin-C (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4HK2-1 RCSB PDB | xray | resolution: 1.4 Å | in vitro · -173.15 °C · pH 4 · ligands SO4 U7Ub25.2540 · Ubiquitin (chains A,B,C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4HXD-1 RCSB PDB | xray | resolution: 2.85 Å | in vitro · -173.15 °C · pH 5.5 · ligands 4LJ, SO4 Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases · Polyubiquitin-C (chains A,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4I6L-2 RCSB PDB | xray | resolution: 2.488 Å | in vitro · -180.15 °C · pH 6.5 Crystal structure of OTUB1 in complex with ubiquitin variant · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4IUM-2 RCSB PDB | xray | resolution: 1.45 Å | in vitro · -173.15 °C · pH 6.2 · ligands GOL, ZN Equine arteritis virus papain-like protease 2 (PLP2) covalently bound to ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4JQW-2 RCSB PDB | xray | resolution: 2.9 Å | in vitro · -173.15 °C · pH 8.6 · ligands PO4 Crystal Structure of a Complex of NOD1 CARD and Ubiquitin · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4K1R-2 RCSB PDB | xray | resolution: 1.632 Å | in vitro · -173.15 °C · pH 3 · ligands CL, EDO, ZN Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin · Polyubiquitin-C (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4K7S-1 RCSB PDB | xray | resolution: 1.76 Å | in vitro · -173.15 °C · pH 7 · ligands ACT, EDO, ZN Crystal structure of Zn2-hUb (human ubiquitin) adduct from a solution 35 mM zinc acetate/1.3 mM hUb · ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4K7U-1 RCSB PDB | xray | resolution: 1.76 Å | in vitro · -173.15 °C · pH 7 · ligands ACT, EDO, PEG, ZN Crystal structure of Zn2.3-hUb (human ubiquitin) adduct from a solution 70 mM zinc acetate/1.3 mM hUb · ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4K7W-1 RCSB PDB | xray | resolution: 1.76 Å | in vitro · -173.15 °C · pH 7 · ligands ACT, EDO, ZN Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb · ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4KSL-2 RCSB PDB | xray | resolution: 2.83 Å | in vitro · -173.15 °C · pH 5.5 Gumby/Fam105B in complex with linear di-ubiquitin · Polyubiquitin-C (chains C,D,F,H,J,L,N,P,R,T,V,X) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4LDT-4 RCSB PDB | xray | resolution: 1.901 Å | in vitro · -196.15 °C · pH 6 · ligands EDO, MG The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4LDT-2 RCSB PDB | xray | resolution: 1.901 Å | in vitro · -196.15 °C · pH 6 · ligands EDO, MG The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub · Ubiquitin aldehyde (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4LCD-3 RCSB PDB | xray | resolution: 3.1 Å | in vitro · -173.15 °C · pH 7.2 Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 · Ubiquitin (chains E,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4KSK-2 RCSB PDB | xray | resolution: 2.4 Å | in vitro · -173.15 °C · pH 5.5 · ligands SO4 Gumby/Fam105B in complex with ubiquitin · Polyubiquitin-C (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4DDG-2 RCSB PDB | xray | resolution: 3.2987 Å | in vitro · -74.9 °C · pH 7.5 Crystal structure of human OTUB1/UbcH5b~Ub/Ub · Polyubiquitin-C (chains D,E,F,G,H,I,M,N,O,P,Q,R) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4BVU-3 RCSB PDB | xray | resolution: 2.7 Å | in vitro · 13.85 °C · pH 7.5 Structure of Shigella effector OspG in complex with host UbcH5c- Ubiquitin conjugate · UBIQUITIN (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4AUQ-3 RCSB PDB | xray | resolution: 2.176 Å | in vitro · -173.15 °C · ligands ZN Structure of BIRC7-UbcH5b-Ub complex. · POLYUBIQUITIN-C (chains C,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3WXF-2 RCSB PDB | xray | resolution: 2.3 Å | in vitro · -173.15 °C · pH 8.5 · ligands SO4 Crystal structure of CYLD USP domain (C596S E674Q) in complex with Met1-linked diubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3WXE-2 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -173.15 °C · pH 8.5 Crystal structure of CYLD USP domain (C596S) in complex with Met1-linked diubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3VFK-1 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -180.15 °C · pH 4.6 · ligands GCS, MAN, NAG, T55 The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier · ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3OJ4-2 RCSB PDB | xray | resolution: 3.4 Å | in vitro · -173.15 °C · pH 7.1 · ligands ZN Crystal structure of the A20 ZnF4, ubiquitin and UbcH5A complex · Ubiquitin (chains B,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-3O65-2 RCSB PDB | xray | resolution: 2.7 Å | in vitro · pH 6.5 · ligands NA Crystal structure of a Josephin-ubiquitin complex: Evolutionary restraints on ataxin-3 deubiquitinating activity · Ubiquitin (chains B,D,F,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4MM3-1 RCSB PDB | xray | resolution: 2.752 Å | in vitro · 3.85 °C · pH 7.5 · ligands ZN Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4MSM-2 RCSB PDB | xray | resolution: 1.74 Å | in vitro · -173.15 °C · pH 8 · ligands EDO, PO4, ZN Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 E286A mutant bound to ubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4NQK-2 RCSB PDB | xray | resolution: 3.7 Å | in vitro · -173.15 °C · pH 7 Structure of an Ubiquitin complex · Ubiquitin (chains E,F,G,H,I,J) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4UN2-1 RCSB PDB | xray | resolution: 1.51 Å | in vitro · -173.15 °C · pH 8.5 Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin · UBIQUITIN (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4V3K-2 RCSB PDB | xray | resolution: 2.04 Å | in vitro · -173.15 °C · ligands CL, EDO, ZN RNF38-UbcH5B-UB complex · POLYUBIQUITIN-C (chains B,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4V3L-2 RCSB PDB | xray | resolution: 1.53 Å | in vitro · -173.15 °C · ligands EDO, ZN RNF38-UB-UbcH5B-Ub complex · POLYUBIQUITIN-C (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4XOK-1 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · pH 7 · ligands ZN Observing the overall rocking motion of a protein in a crystal. · Ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4XOL-1 RCSB PDB | xray | resolution: 2.91 Å | in vitro · -173.15 °C · pH 6.33 · ligands ZN Observing the overall rocking motion of a protein in a crystal - Cubic Ubiquitin crystals. · Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5AF4-1 RCSB PDB | xray | resolution: 1.85 Å | in vitro · -163.15 °C · pH 8 · ligands GOL, SO4 Structure of Lys33-linked diUb · UBIQUITIN (chains A,B,C,D,E,F,G,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5AF5-1 RCSB PDB | xray | resolution: 1.68 Å | in vitro · -163.15 °C · pH 8.5 Structure of Lys33-linked triUb S.G. P 212121 · POLYUBIQUITIN-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5AF6-1 RCSB PDB | xray | resolution: 3.4 Å | in vitro · -163.15 °C · pH 6.5 · ligands ZN Structure of Lys33-linked diUb bound to Trabid NZF1 · UBIQUITIN (chains A,B,C,D,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5AIU-3 RCSB PDB | xray | resolution: 2.21 Å | in vitro · -173.15 °C · ligands EDO, ZN A complex of RNF4-RING domain, Ubc13-Ub (isopeptide crosslink) · POLYUBIQUITIN-C (chains C,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5B83-1 RCSB PDB | xray | resolution: 2.694 Å | in vitro · -173.15 °C Crystal structure of Optineurin UBAN in complex with linear ubiquitin · tetra ubiquitin (chains A,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5C7J-2 RCSB PDB | xray | resolution: 3 Å | in vitro · -173.15 °C · pH 7 CRYSTAL STRUCTURE OF NEDD4 WITH A UB VARIANT · Polyubiquitin-C (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5C7M-2 RCSB PDB | xray | resolution: 3.03 Å | in vitro · -173.15 °C · pH 7.5 CRYSTAL STRUCTURE OF E3 LIGASE ITCH WITH A UB VARIANT · Polyubiquitin-C (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5H07-1 RCSB PDB | xray | resolution: 2.586 Å | in vitro · -160.15 °C TNIP2-Ub complex, C2 form · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5NL4-1 RCSB PDB | xray | resolution: 1.32 Å | in vitro · -173.15 °C · ligands ACT, EDO, PEG, ZN Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5NLF-1 RCSB PDB | xray | resolution: 1.5 Å | in vitro · -173.15 °C · ligands ACT, ZN Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5NLI-1 RCSB PDB | xray | resolution: 1.53 Å | in vitro · -173.15 °C · ligands ACT, EDO, ETF, ZN Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5OE7-2 RCSB PDB | xray | resolution: 2.95 Å | in vitro · 13.85 °C Structure of OTULIN bound to the Met1-linked diubiquitin activity probe · Polyubiquitin-C (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5OHV-1 RCSB PDB | xray | resolution: 2.801 Å | in vitro · -163.15 °C · pH 5.2 · ligands GOL, SO4 K33-specific affimer bound to K33 diUb · Ubiquitin (chains A,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5OXH-1 RCSB PDB | xray | resolution: 1.601 Å | in vitro · -173.15 °C · pH 9 · ligands SO4 C-terminally retracted ubiquitin T66V/L67N mutant · Ubiquitin T66V/L67N mutant (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5OXI-1 RCSB PDB | xray | resolution: 1.63 Å | in vitro · -173.15 °C · pH 6 · ligands SO4 C-terminally retracted ubiquitin L67S mutant · Ubiquitin L67S mutant (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5UDH-3 RCSB PDB | xray | resolution: 3.24 Å | in vitro · -173.15 °C · pH 7 · ligands ZN HHARI/ARIH1-UBCH7~Ubiquitin · Ubiquitin C variant (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5WQ4-1 RCSB PDB | xray | resolution: 3 Å | in vitro · 25 °C · pH 7.5 Crystal structure of OPTN and linear diubiquitin complex · ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5ZQ3-2 RCSB PDB | xray | resolution: 2.182 Å | in vitro · -80.15 °C PDE-Ubiquitin · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5ZQ4-2 RCSB PDB | xray | resolution: 2.217 Å | in vitro · -80.15 °C · ligands AMP PDE-Ubi-ADPr · ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5ZQ5-2 RCSB PDB | xray | resolution: 2.487 Å | in vitro · -80.15 °C SidE-Ubi · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5ZQ6-2 RCSB PDB | xray | resolution: 3.009 Å | in vitro · -80.15 °C · ligands ADP SidE-Ubi-ADPr · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5ZQ7-2 RCSB PDB | xray | resolution: 2.847 Å | in vitro · -80.15 °C · ligands AMP, NAD SidE-Ubi-NAD · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6A43-1 RCSB PDB | xray | resolution: 2.4 Å | in vitro · -183.15 °C · pH 7.5 · ligands ACY R1EN(5-225)-ubiquitin fusion · RNA-directed DNA polymerase homolog (R1),Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6A44-1 RCSB PDB | xray | resolution: 2.4 Å | in vitro · -183.15 °C · pH 7.3 · ligands ACY R1EN(5-227)-ubiquitin fusion · RNA-directed DNA polymerase homolog (R1),Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6AQR-4 RCSB PDB | xray | resolution: 2.1 Å | in vitro · -173.15 °C · pH 7 · ligands ZN SAGA DUB module Ubp8(C146A)/Sgf11/Sus1/Sgf73 bound to monoubiquitin · Polyubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6B7M-2 RCSB PDB | xray | resolution: 1.7 Å | in vitro · -173.15 °C · pH 7 Crystal structure of Legionella effector sdeD (lpg2509) in complex with Ubiquitin · Polyubiquitin-C (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6B7O-2 RCSB PDB | xray | resolution: 1.85 Å | in vitro · -173.15 °C · pH 7 · ligands AR6 Crystal structure of Legionella effector sdeD (lpg2509) H67A in complex with ADP-ribosylated Ubiquitin · Polyubiquitin-C (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6EQI-1 RCSB PDB | xray | resolution: 3.1 Å | in vitro · -173.15 °C · ligands GOL Structure of PINK1 bound to ubiquitin · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6K2U-1 RCSB PDB | xray | resolution: 2.554 Å | in vitro · -173.15 °C · pH 5.5 · ligands APR, MG, ZN Crystal structure of Thr66 ADP-ribosylated ubiquitin · Polyubiquitin-C (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6N13-4 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7 · ligands ZN UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin · phosphoubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6N6R-1 RCSB PDB | xray | resolution: 1.95 Å | in vitro · -173.15 °C · pH 6.5 Crystal structure of ABIN-1 UBAN in complex with two M1-linked di-ubiquitins · Ubiquitin (chains A,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6NQA-7 RCSB PDB | cryoem | resolution: 3.54 Å | in vitro · ligands SAM Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 1-to-1 complex · Ubiquitin (chains L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6NXK-1 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C Ubiquitin binding variants · Polyubiquitin-C (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6OI4-2 RCSB PDB | xray | resolution: 1.76 Å | in vitro · -173.15 °C · pH 4.8 · ligands EDO RPN13 (19-132)-RPN2 (940-952) pY950-Ub complex · ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6P5B-3 RCSB PDB | xray | resolution: 2.099 Å | in vitro · -173.15 °C · pH 9 Crystal Structure of MavC in Complex with Ub-UbE2N · Ubiquitin (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6Q00-1 RCSB PDB | xray | resolution: 0.85 Å | in vitro · -173.15 °C · pH 7.5 · ligands K TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 1 · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6KBE-2 RCSB PDB | xray | resolution: 2.339 Å | in vitro · -173.15 °C Structure of Deubiquitinase · Polyubiquitin-C (chains G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5NMC-1 RCSB PDB | xray | resolution: 1.7 Å | in vitro · -173.15 °C · ligands ACT, ZN Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb · Polyubiquitin-C (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-5E6J-2 RCSB PDB | xray | resolution: 2.85 Å | in vitro · -173.15 °C · pH 5.5 · ligands ACT, NI Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe · ubiquitin (chains B,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4ZQS-1 RCSB PDB | xray | resolution: 1.804 Å | in vitro · -173.15 °C · pH 8 New compact conformation of linear Ub2 structure · ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4MSQ-2 RCSB PDB | xray | resolution: 1.952 Å | in vitro · -173.15 °C · pH 8.3 · ligands EDO, PO4, ZN Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 catalytic domain bound to ubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-4MDK-2 RCSB PDB | xray | resolution: 2.6095 Å | in vitro · -173.15 °C · pH 7 · ligands U94 Cdc34-ubiquitin-CC0651 complex · Ubiquitin (chains E,F,G,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6QML-3 RCSB PDB | xray | resolution: 2.1 Å | in vitro · -193.15 °C · pH 5.5 · ligands BR, CL, EDO, K UCHL3 in complex with synthetic, K27-linked diubiquitin · Polyubiquitin-C (chains C,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6RYA-2 RCSB PDB | xray | resolution: 2.21 Å | in vitro · -173.15 °C · pH 8 Structure of Dup1 mutant H67A:Ubiquitin complex · Polyubiquitin-C (chains B,D,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6S53-2 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · pH 8.5 · ligands MPD, ZN Crystal structure of TRIM21 RING domain in complex with an isopeptide-linked Ube2N~ubiquitin conjugate · Polyubiquitin-C (chains D,F,J,L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6SQR-6 RCSB PDB | xray | resolution: 2.18 Å | in vitro · -173.15 °C · ligands EDO, NO3, ZN Crystal structure of Cat MDM2-S429E RING domain bound to UbcH5B-Ub · Polyubiquitin-C (chains I) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6T7F-3 RCSB PDB | xray | resolution: 2.58 Å | in vitro · -173.15 °C · pH 8 · ligands LWZ, ZN RCR E3 ligase E2-Ubiquitin transthiolation intermediate · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6TTU-7 RCSB PDB | cryoem | resolution: 3.7 Å | in vitro · ligands ZN Ubiquitin Ligation to substrate by a cullin-RING E3 ligase at 3.7A resolution: NEDD8-CUL1-RBX1 N98R-SKP1-monomeric b-TRCP1dD-IkBa-UB~UBE2D2 · Polyubiquitin-C (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6TUV-2 RCSB PDB | xray | resolution: 2.16 Å | in vitro · -173.15 °C · pH 8.5 · ligands SO4 Crystal structure of Mindy1 in complex with Lys48 linked di-ubiquitin · Polyubiquitin-C (chains D,H,L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6TXB-2 RCSB PDB | xray | resolution: 2.18 Å | in vitro · -173.15 °C · pH 7 · ligands CL, NA Crystal structure of Mindy1 mutant (P138A) in complex with Lys48 linked di-ubiquitin · Polyubiquitin-C (chains D,H,L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6UMP-1 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C Crystal structure of MavC in complex with substrate mimic in P65 space group · Ubiquitin (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6V5D-1 RCSB PDB | nmr_structure | structure | in vitro · 34.85 °C · pH 6.5 EROS3 RDC and NOE Derived Ubiquitin Ensemble · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6VAE-3 RCSB PDB | cryoem | resolution: 3.6 Å | in vitro Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6VAF-3 RCSB PDB | cryoem | resolution: 3.9 Å | in vitro Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6VEN-7 RCSB PDB | cryoem | resolution: 3.37 Å | in vitro · ligands SAM, ZN Yeast COMPASS in complex with a ubiquitinated nucleosome · Ubiquitin (chains K) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6W9D-3 RCSB PDB | xray | resolution: 3.19 Å | in vitro · -173.15 °C · pH 7.5 · ligands IOD, ZN RNF12 RING domain in complex with a Ube2d2~Ub conjugate · Ubiquitin (chains C,F,I) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6WJD-19 RCSB PDB | cryoem | resolution: 4.8 Å | in vitro · ligands ADP, AGS, MG, ZN SA-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A · Ubiquitin (chains u) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6WKR-1 RCSB PDB | cryoem | resolution: 3.5 Å | in vitro · ligands MG, SAH, ZN PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome · Ubiquitin (chains F,T) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6WTG-2 RCSB PDB | xray | resolution: 2.63 Å | in vitro · -173.15 °C · pH 9 SdeA DUB Domain in complex with Ubiquitin · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6YPT-2 RCSB PDB | xray | resolution: 3.663 Å | in vitro · -173.15 °C · ligands GVE X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin · Polyubiquitin-C (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6Z7V-2 RCSB PDB | xray | resolution: 2.65 Å | in vitro · -173.15 °C · ligands K, PG4 Crystal structure of Mindy2 (C266A) in complex with Lys48 linked di-ubiquitin (K48-Ub2) · Polyubiquitin-C (chains C,D,E,F,G,H,I) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7B5L-6 RCSB PDB | cryoem | resolution: 3.8 Å | in vitro · ligands SY8, ZN Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1 · Polyubiquitin-C (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7B5M-6 RCSB PDB | cryoem | resolution: 3.91 Å | in vitro · ligands ZN Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2 · Polyubiquitin-C (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7B5N-3 RCSB PDB | cryoem | resolution: 3.6 Å | in vitro · ligands SY8, ZN Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1. · Polyubiquitin-C (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7BBD-2 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · ligands ZN Crystal structure of monoubiquitinated TRIM21 RING (Ub-RING) In complex with ubiquitin charged Ube2N (Ube2N~Ub) and Ube2V2 · Polyubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7BBF-3 RCSB PDB | xray | resolution: 2.54 Å | in vitro · -173.15 °C Crystal structure of ubiquitin charged Ube2N (Ube2N~Ub) in complex with Ube2V2 · Polyubiquitin-C (chains C,F,I) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7BXG-3 RCSB PDB | xray | resolution: 2.705 Å | in vitro · -193.15 °C MavC-UBE2N-Ub complex · Polyubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7EAO-1 RCSB PDB | xray | resolution: 2.9 Å | in vitro · -160.15 °C The structure of the A20-binding inhibitor of NF-kB 1 in complex with tri-ubiquitin · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7EB9-1 RCSB PDB | xray | resolution: 3.2 Å | in vitro · -160.15 °C · pH 6 The structure of the A20-binding inhibitor of NF-kB 1 in complex with tetra-ubiquitin · tetra ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7K6P-8 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands SAM Active state Dot1 bound to the unacetylated H4 nucleosome · Ubiquitin (chains L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7KEO-3 RCSB PDB | xray | resolution: 2.9 Å | in vitro · -173.15 °C · pH 7.4 · ligands PO4 Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment · Ubiquitin (chains C,D,G,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7M4M-2 RCSB PDB | xray | resolution: 2.39 Å | in vitro · -173.15 °C · pH 7 · ligands GOL, ZN Crystal structure of RBR E3 ligase RNF216 with ubiquitin · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7M4N-2 RCSB PDB | xray | resolution: 2.52 Å | in vitro · -173.15 °C · pH 7.9 · ligands GOL, SO4, ZN Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin · Ubiquitin (chains C,D,E,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7MEX-1 RCSB PDB | cryoem | resolution: 3.35 Å | in vitro · ligands ZN Structure of yeast Ubr1 in complex with Ubc2 and N-degron · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7MIC-2 RCSB PDB | xray | resolution: 2.09 Å | in vitro · -180.15 °C · pH 3.8 · ligands 3CN, GOL Maize rayado fino virus protease in complex with Ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7OWD-2 RCSB PDB | xray | resolution: 1.71 Å | in vitro · -63.15 °C · pH 4.2 Structure of CYLD CAP-Gly3 (467-552) bound to Ub; tetragonal space group · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7R70-1 RCSB PDB | xray | resolution: 2.499 Å | in vitro · -173.15 °C · pH 6.5 · ligands GOL, ZN Crystal Structure of the UbArk2C fusion protein · Ubiquitin,E3 ubiquitin-protein ligase RNF165 (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7R71-1 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · ligands ZN Crystal Structure of the UbArk2C-UbcH5b~Ub complex · Ubiquitin,E3 ubiquitin-protein ligase RNF165 (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7R71-2 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · ligands ZN Crystal Structure of the UbArk2C-UbcH5b~Ub complex · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7TV4-2 RCSB PDB | xray | resolution: 4.2 Å | in vitro · -173.15 °C · pH 8.5 · ligands ZN Crystal structure of NEMO CoZi in complex with HOIP NZF1 and linear diubiquitin · Polyubiquitin-C (chains C,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7UV5-2 RCSB PDB | xray | resolution: 1.45 Å | in vitro · -173.15 °C · pH 7.5 · ligands EDO, ZN The crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a Lys48-linked di-ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7UYH-1 RCSB PDB | xray | resolution: 2.8 Å | in vitro · -173.15 °C · pH 5.5 Structure of the first OTU domain from Legionella pneumophila effector protein LotA bound to K6-linked diUb · Ubiquitin (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7NPI-2 RCSB PDB | xray | resolution: 2.81 Å | in vitro · -173.15 °C · ligands CL, NA Crystal structure of Mindy2 (C266A) in complex with Lys48-linked penta-ubiquitin (K48-Ub5) · Polyubiquitin-C (chains B,C,D,E,F,H,I,J,K,L,N,O,P,Q,R,T,U,V,W,X,Z,a,b,c,d,f,g,h,i,j,l,m,n,o,p) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7MYF-3 RCSB PDB | xray | resolution: 3 Å | in vitro · -173.15 °C Ubiquitin variant UbV.k.1 in complex with Ube2k · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7M4O-2 RCSB PDB | xray | resolution: 2.21 Å | in vitro · -173.15 °C · pH 5.22 · ligands GOL, PG0, SO4, ZN Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin · Ubiquitin (chains B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7K6Q-8 RCSB PDB | cryoem | resolution: 3.1 Å | in vitro · ligands SAM Active state Dot1 bound to the H4K16ac nucleosome · Ubiquitin (chains L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7JXV-2 RCSB PDB | xray | resolution: 2.35 Å | in vitro · -173.15 °C · pH 6 ANTH domain of CALM (clathrin-assembly lymphoid myeloid leukemia protein) bound to ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7EAL-1 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -163.15 °C · ligands GOL The structure of the A20-Binding Inhibitor of NF-kB 1 in complex with di-ubiquitin · ubiquitin (chains A,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6UPU-2 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · pH 7.5 Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin · Ubiquitin (chains B,C,D,F,G,H,J,K,L,N,O,P) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6UMS-3 RCSB PDB | xray | resolution: 2.344 Å | in vitro · -173.15 °C Crystal structure of MavC in complex with its substrate mimic in C222(1) space group · Ubiquitin (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6ULH-3 RCSB PDB | xray | resolution: 1.968 Å | in vitro · -173.15 °C · pH 4.6 Structure of MavC in complex with its substrate in R3 spacegroup · Ubiquitin (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6TNF-3 RCSB PDB | cryoem | resolution: 3.8 Å | in vitro Structure of monoubiquitinated FANCD2 in complex with FANCI and DNA · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-6T9L-12 RCSB PDB | cryoem | resolution: 3.6 Å | in vitro · ligands ZN SAGA DUB module bound to a ubiqitinated nucleosome · Polyubiquitin-C (chains O) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7YUI-1 RCSB PDB | xray | resolution: 2.599 Å | in vitro · -173.15 °C · ligands ZN Crystal structure of HOIL-1L(195-423) in complex with the linear tetra-ubiquitin · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-7ZJ3-3 RCSB PDB | xray | resolution: 2.53 Å | in vitro · -173.15 °C · pH 7.5 · ligands ZN Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate · Polyubiquitin-C (chains C,F,I,L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8A9J-3 RCSB PDB | cryoem | resolution: 2.8 Å | in vitro · ligands ZN Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 without ML323 (consensus reconstruction) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8A9K-3 RCSB PDB | cryoem | resolution: 2.85 Å | in vitro · ligands JDA, ZN Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 with ML323 (consensus reconstruction) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ADB-2 RCSB PDB | xray | resolution: 1.73 Å | in vitro · -173.15 °C · pH 7 · ligands AYE, CIT Viral tegument-like DUBs · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8B3G-4 RCSB PDB | cryoem | resolution: 4.4 Å | in vitro · ligands ZN C(N)RL4CSA-UVSSA-E2-ubiquitin complex. · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8E7O-2 RCSB PDB | xray | resolution: 1.7 Å | in vitro · -173.15 °C · ligands SO4 CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8E7O-1 RCSB PDB | xray | resolution: 1.7 Å | in vitro · -173.15 °C · ligands SO4 CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN · Ubiquitin (chains A,B,C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8EAZ-3 RCSB PDB | xray | resolution: 3.08 Å | in vitro · -173.15 °C · pH 6.2 · ligands ZN HOIL-1/E2-Ub/Ub transthiolation complex · Ubiquitin (chains E,F,G,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8EB0-3 RCSB PDB | xray | resolution: 3.03 Å | in vitro · -173.15 °C · pH 7.9 · ligands SO4, ZN RNF216/E2-Ub/Ub transthiolation complex · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8FTQ-2 RCSB PDB | xray | resolution: 2.1 Å | in vitro · -173.15 °C · pH 4.6 · ligands ZTO Crystal structure of hRpn13 Pru domain in complex with Ubiquitin and XL44 · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8JRT-26 RCSB PDB | cryoem | resolution: 3.6 Å | in vitro · ligands ADP, ATP, MG Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub. · Polyubiquitin-B (chains u,v,w) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8JTI-26 RCSB PDB | cryoem | resolution: 3.8 Å | in vitro · ligands ADP, ATP, MG Cryo-EM structure of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub. · Polyubiquitin-B (chains u,v,w,x) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8K6E-3 RCSB PDB | xray | resolution: 2.74 Å | in vitro · -173.15 °C · ligands ANP, AR6 LnaB-Actin-PRUb ternary complex · Polyubiquitin-B (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8K6F-3 RCSB PDB | xray | resolution: 3.41 Å | in vitro · -173.15 °C · ligands AR6, ATP LnaB-Actin-PRUb ternary complex · Ubiquitin (chains E,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8K6I-3 RCSB PDB | xray | resolution: 3.19 Å | in vitro · -173.15 °C · ligands AR6, PO4 LnaB-Actin-PRUb ternary complex · ubiquitin (chains E,F) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8K6R-2 RCSB PDB | xray | resolution: 2.76 Å | in vitro · -173.15 °C · ligands ANP, AR6 LnaB-Actin-PRUb ternary complex in the presence of AMPPNP · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8K6V-3 RCSB PDB | xray | resolution: 2.6 Å | in vitro · -173.15 °C · ligands ANP, AR6 LnaB-Actin-PRUb ternary complex · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8OFF-7 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1) · Ubiquitin (chains Fa) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8PJN-4 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands ZN Catalytic module of human CTLH E3 ligase bound to multiphosphorylated UBE2H~ubiquitin · Ubiquitin (chains u) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8PMQ-4 RCSB PDB | cryoem | resolution: 3.53 Å | in vitro · ligands ZN Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8PQL-5 RCSB PDB | cryoem | resolution: 3.76 Å | in vitro · ligands SY8, ZN K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8PQL-2 RCSB PDB | cryoem | resolution: 3.76 Å | in vitro · ligands SY8, ZN K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide · Polyubiquitin-C,Nucleotide exchange factor SIL1 (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8Q06-1 RCSB PDB | xray | resolution: 1.9 Å | in vitro · -173.15 °C · ligands GOL EF-hand of MINDY3 Deubiquitylase in Complex with UBL of RAD23A · Ubiquitin carboxyl-terminal hydrolase MINDY (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8Q7R-3 RCSB PDB | cryoem | resolution: 3.71 Å | in vitro · ligands U9O, ZN Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8R5H-4 RCSB PDB | cryoem | resolution: 3.44 Å | in vitro · ligands 759, SY8, ZN Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2 · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8RX0-9 RCSB PDB | cryoem | resolution: 3.7 Å | in vitro · ligands 759, ZN (NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub · Polyubiquitin-B (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8SSI-2 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -173.15 °C · ligands AYE, GOL Structure of Burkholderia pseudomallei deubiquitinase TssM in complex with ubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ST8-2 RCSB PDB | xray | resolution: 1.75 Å | in vitro · -173.15 °C · ligands AYE Structure of E3 ligase SopA bound to ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ST9-2 RCSB PDB | xray | resolution: 2.5 Å | in vitro · -173.15 °C · ligands AYE Structure of E3 ligase NleL bound to ubiquitin · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8SVF-9 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro BAP1/ASXL1 bound to the H2AK119Ub Nucleosome · Ubiquitin (chains M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8T48-1 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · ligands GOL, LI The N4BP1 CUE-like domain in complex with linear di-Ubiquitin · Di-Ubiquitin (chains A,B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8U5H-3 RCSB PDB | cryoem | resolution: 3.23 Å | in vitro Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ZDC-37 RCSB PDB | cryoem | resolution: 3.8 Å | in vitro · ligands ZN Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 · Ubiquitin (chains i,j) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ZDD-36 RCSB PDB | cryoem | resolution: 3.7 Å | in vitro · ligands ZN Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1) · Ubiquitin (chains i,j) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8ZZ4-1 RCSB PDB | integrative | structure | in vitro Structure of K63-linked Diubiquitin · Ubiquitin (chains A,B) | unmapped |
| EV-PDB-9A1L-2 RCSB PDB | integrative | structure | in vitro N4BP1 CUE domain in complex with ubiquitin · Ubiquitin (chains B) | unmapped |
| EV-PDB-9D1I-4 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · ligands GOL Structure of Ubiquitin bound to KLHDC3-EloB/C · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9D1Y-4 RCSB PDB | xray | resolution: 2.6 Å | in vitro · -173.15 °C · ligands GOL Structure of G75R Ubiquitin bound to KLHDC3-EloB/C · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9D1Z-4 RCSB PDB | xray | resolution: 1.88 Å | in vitro · -173.15 °C · ligands MPD Structure of G75Q Ubiquitin bound to KLHDC3-EloB/C · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9D8P-4 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C · Ubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DBY-11 RCSB PDB | cryoem | resolution: 2.8 Å | in vitro · ligands ZN ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome · Ubiquitin (chains N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DDE-10 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands ZN ncPRC1RYBP bound to H2AK119Ub/H1.4 chromatosome · Ubiquitin (chains N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DG3-9 RCSB PDB | cryoem | resolution: 3.46 Å | in vitro · ligands ZN ncPRC1RYBP Delta-linker mutant bound to singly modified H2AK119Ub nucleosome · Ubiquitin (chains N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DI1-3 RCSB PDB | cryoem | resolution: 2.7 Å | in vitro · ligands A1A4Y, A1IB8, ZN Cryo-EM structure of the USP1-UAF1-Ubiquitin complex inhibited by KSQ-4279 · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DI2-3 RCSB PDB | cryoem | resolution: 2.6 Å | in vitro · ligands A1A4Y, ZN Cryo-EM structure of the USP1-UAF1-Ubiquitin-VS complex · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9DNS-3 RCSB PDB | cryoem | resolution: 2.8 Å | in vitro Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex · Ubiquitin (chains U,V,W,X) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9EGV-2 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · pH 6.2 · ligands CL, SO4, ZN HOIL-1 RING2 domain bound to ubiquitin · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9EGW-2 RCSB PDB | xray | resolution: 1.78 Å | in vitro · -173.15 °C · pH 6 · ligands CL, SO4, ZN HOIL-1 RING2 domain bound to ubiquitin-maltose (maltose not modelled) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9EBS-1 RCSB PDB | cryoem | resolution: 3.3 Å | in vitro · ligands A1A4Y, A1BHF, ZN Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348 · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8B3I-4 RCSB PDB | cryoem | resolution: 3.5 Å | in vitro · ligands ZN CRL4CSA-E2-Ub (state 2) · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-8AMS-3 RCSB PDB | xray | resolution: 2.4 Å | in vitro · -173.15 °C · pH 7.5 · ligands GOL, PE8, ZN Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin · Polyubiquitin-C (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9ERZ-2 RCSB PDB | xray | resolution: 2.02 Å | in vitro · -173.15 °C · ligands CA Structure of CBL-TKBD bound to Ubiquitin-fused CBLock peptide · Polyubiquitin-C,Ub-fused CBLock peptide (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9FCI-2 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands A1IB8, ZN USP1 bound to KSQ-4279 and ubiquitin conjugated to FANCD2 (focused refinement) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9FCJ-1 RCSB PDB | cryoem | resolution: 2.7 Å | in vitro · ligands JDA, ZN USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (ordered subset, focused refinement) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9FJ3-1 RCSB PDB | xray | resolution: 1.4 Å | in vitro · -173.15 °C · ligands A1IDH Structure of ubiquitin bound of coiled-coil UIM form 2 · Polyubiquitin-C (chains A,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9FJ4-1 RCSB PDB | xray | resolution: 1.54 Å | in vitro · -173.15 °C · ligands A1IDH Structure of ubiquitin bound to coiled coil-UIM form 1 · Polyubiquitin-C (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9GKN-2 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands SY8 Structure of HECT E3 TRIP12 forming K29-linked Ubiquitin chains · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9GKN-1 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands SY8 Structure of HECT E3 TRIP12 forming K29-linked Ubiquitin chains · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9HNW-4 RCSB PDB | cryoem | resolution: 3.04 Å | in vitro · ligands ZN USP1-UAF1 bound to Lys63-linked diubiquitin · Polyubiquitin-B (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9HNW-3 RCSB PDB | cryoem | resolution: 3.04 Å | in vitro · ligands ZN USP1-UAF1 bound to Lys63-linked diubiquitin · Polyubiquitin-B (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9IJU-2 RCSB PDB | xray | resolution: 2.46 Å | in vitro · -193.15 °C · ligands SRE Sertraline enhances the deubiquitinase activity of USP7 by binding to its switching loop region · Ubiquitin (chains B,D,F,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9ISZ-2 RCSB PDB | xray | resolution: 2.6 Å | in vitro · -173.15 °C · ligands SAM, ZN Structure of Clr4 catalyzing K14-ubiquitinated histone H3 K9 methylation · Ubiquitin (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KEN-2 RCSB PDB | cryoem | resolution: 3.63 Å | in vitro cryo-EM structure of TRIP12 in complex with K29/48 branched-triUb · Ubiquitin K29C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KEN-1 RCSB PDB | cryoem | resolution: 3.63 Å | in vitro cryo-EM structure of TRIP12 in complex with K29/48 branched-triUb · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KHS-4 RCSB PDB | cryoem | resolution: 4.31 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (monomeric conformation) · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KHS-3 RCSB PDB | cryoem | resolution: 4.31 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (monomeric conformation) · Polyubiquitin-C (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KHS-2 RCSB PDB | cryoem | resolution: 4.31 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (monomeric conformation) · Polyubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9M7O-4 RCSB PDB | cryoem | resolution: 4.14 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-ub complex with K29triUb(monomeric conformation) · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9M7O-3 RCSB PDB | cryoem | resolution: 4.14 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-ub complex with K29triUb(monomeric conformation) · Polyubiquitin-C (chains E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9M7O-2 RCSB PDB | cryoem | resolution: 4.14 Å | in vitro Cryo-EM structure of Ufd2/Ubc4-ub complex with K29triUb(monomeric conformation) · Polyubiquitin-C (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9MC5-3 RCSB PDB | cryoem | resolution: 3.29 Å | in vitro · ligands AMP Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 3 · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9N1F-4 RCSB PDB | xray | resolution: 2.1 Å | in vitro · -173.15 °C · ligands ZN Crystal Structure of the Ark2C-Ubc13~Ub-Mms2 complex · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9OFV-54 RCSB PDB | cryoem | resolution: 3.16 Å | in vitro · ligands ADP, ATP, MG, SPD, ZN Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex · Polyubiquitin-C (chains 2) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9PL1-1 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 6.4 Structure of metastable folding intermediate of V17A/V26A ubiquitin derived from pressure-jump NMR data · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9PLQ-2 RCSB PDB | cryoem | resolution: 3.19 Å | in vitro HUWE1(CS)-Ubiquitin bound to the HECT domain · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9Q8Y-3 RCSB PDB | xray | resolution: 2.63 Å | in vitro · -173.15 °C · pH 7.6 · ligands ZN Structure of RNF38 RING with linchpin mutant R454Y in complex with Ubch5B-Ub · Ubiquitin-40S ribosomal protein S27a (chains F,G) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QGG-3 RCSB PDB | cryoem | resolution: 2.58 Å | in vitro · ligands AMP Consensus structure of dUBA1-UbDha-dBIRC6 trapped ternary complex · Polyubiquitin-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QIA-3 RCSB PDB | cryoem | resolution: 4.38 Å | in vitro · ligands AMP, IHP Structure of UBA6-UbDha-BIRC6 trapped ternary complex (cluster 2) · Polyubiquitin-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SDX-3 RCSB PDB | cryoem | resolution: 2.97 Å | in vitro · ligands SY8, ZN Structure of RBR binding E2 variant crosslinked with NEDD8-CUL5-RBX2 bound ARIH2 and Ub · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMN-6 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form StateC StateP · Polyubiquitin-C (chains K,M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMN-7 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form StateC StateP · Polyubiquitin-C (chains L,N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMN-8 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form StateC StateP · Ubiquitin (chains S,T,U,V) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMP-6 RCSB PDB | cryoem | resolution: 3 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form double State P · Polyubiquitin-C (chains K,M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMP-7 RCSB PDB | cryoem | resolution: 3 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form double State P · Polyubiquitin-C (chains L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMP-8 RCSB PDB | cryoem | resolution: 3 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form double State P · Polyubiquitin-C (chains N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMP-9 RCSB PDB | cryoem | resolution: 3 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-polyUbATA - open form double State P · Ubiquitin (chains S,T,U,V) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SMS-5 RCSB PDB | cryoem | resolution: 3.3 Å | in vitro BRCA1-A complex: Ubiquitin bound to BRE at the wrist site (focused 3D class) · Ubiquitin (chains S) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SNA-6 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands A1JPL, ZN BRCA1-A complex bound to K63-diUbATA - open form StateC StateP · Ubiquitin (chains L,N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SNA-7 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands A1JPL, ZN BRCA1-A complex bound to K63-diUbATA - open form StateC StateP · Polyubiquitin-C (chains K,M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SNA-8 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands A1JPL, ZN BRCA1-A complex bound to K63-diUbATA - open form StateC StateP · Ubiquitin (chains S,T) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SO9-6 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-oligoUbATA - closed form StateC* · Ubiquitin (chains L) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SO9-7 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-oligoUbATA - closed form StateC* · Polyubiquitin-C (chains M) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SO9-8 RCSB PDB | cryoem | resolution: 3.4 Å | in vitro · ligands ZN BRCA1-A complex bound to K63-oligoUbATA - closed form StateC* · Polyubiquitin-C (chains N) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SQV-1 RCSB PDB | cryoem | resolution: 3.21 Å | in vitro · ligands ZN Cryo-EM structure of the ARISCdC(E33A):K63-Ub4 complex (Composite map) · Ubiquitin (chains G,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SQW-2 RCSB PDB | cryoem | resolution: 3.2 Å | in vitro · ligands ZN Cryo-EM structure of the ARISCdC(E33A):K63-Ub7 complex (Composite map) · Ubiquitin (chains G,H,I,J) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SQY-5 RCSB PDB | cryoem | resolution: 2.92 Å | in vitro · ligands ZN Cryo-EM structure of the ARISC(E33A)-RAP80:K63-Ub7 complex (Composite map) · Ubiquitin (chains K,L,M,N,O,P) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9SYR-72 RCSB PDB | cryoem | resolution: 3.55 Å | in vitro · ligands COA, GTP, ZN Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD · Ubiquitin-60S ribosomal protein L40 (chains LD) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9T7V-3 RCSB PDB | cryoem | resolution: 2.95 Å | in vitro · ligands FE, SY8, ZN Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub · Ubiquitin (chains U) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9UV6-2 RCSB PDB | nmr_structure | structure | in vitro · 24.85 °C · pH 7.5 · ligands A1EQF Encounter complex structure of E2N and Ubiquitin · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9WYW-1 RCSB PDB | xray | resolution: 2.2 Å | in vitro · -173.15 °C · ligands A1EY9, GOL, NI Crystal structure of K27-linked di-ubiquitin in complex with synthetic antigen binding fragment · Polyubiquitin-C (chains F,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9YEA-2 RCSB PDB | xray | resolution: 1.83 Å | in vitro · -173.15 °C · pH 5.5 Structure of the isopeptide bond-linked UbcH5b~Ubiquitin conjugate complex for an M1K/C85K UbcH5b mutant · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9YKW-2 RCSB PDB | cryoem | resolution: 3.86 Å | in vitro · ligands IHP Cryo-EM structure of double-loaded human UBA6-UBE2Z-Ub(t)/Ub(a) thioester mimetic complex. · Ubiquitin (chains B,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9YLF-3 RCSB PDB | cryoem | resolution: 3.14 Å | in vitro · ligands AMP, IHP Cryo-EM structure of single-loaded human UBA6-UBE2Z/Ub(a) adenylate complex. · Ubiquitin (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9VVV-2 RCSB PDB | xray | resolution: 2.304 Å | in vitro · -173.15 °C · ligands IMD, ZN Crystal structure of USP15 catalytic domain in complex with Ub-PA · Polyubiquitin-C (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9R85-1 RCSB PDB | cryoem | resolution: 3.04 Å | in vitro · ligands AYE Cryo-EM structure of the E3 ligase HECTD3 conjugated to ubiquitin · Ubiquitin (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QH5-3 RCSB PDB | cryoem | resolution: 3.09 Å | in vitro · ligands AMP, IHP Consensus structure of UBA6-UbDha-BIRC6 trapped ternary complex (doubly loaded) · Polyubiquitin-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QGW-3 RCSB PDB | cryoem | resolution: 3.62 Å | in vitro · ligands ATP, IHP Consensus structure of UBA6-UbDha-BIRC6 trapped ternary complex (singly loaded) · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QGR-3 RCSB PDB | cryoem | resolution: 3.1 Å | in vitro · ligands AMP Structure of dUBA1-UbDha-dBIRC6 trapped ternary complex (Cluster 4) · Polyubiquitin-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9QGI-3 RCSB PDB | cryoem | resolution: 3.16 Å | in vitro · ligands AMP Structure of dUBA1-UbDha-dBIRC6 trapped ternary complex (Cluster 2) · Polyubiquitin-C (chains C,E) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9OVX-1 RCSB PDB | xray | resolution: 1.5 Å | in vitro · -173.15 °C · ligands CD, CL CRYSTAL STRUCTURE OF UBIQUITIN K27M MUTANT · Ubiquitin (chains A) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9O4M-1 RCSB PDB | xray | resolution: 2 Å | in vitro · -173.15 °C · pH 7 · ligands 6NA Crystal structure of Ubiquitin Carboxy Terminal Hydrolase L1 Q209C mutant covalently crosslinked to ubiquitin genetically encoded with N6-(6-bromohexanoyl)-L-lysine · Polyubiquitin-C (chains C,D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9MC4-3 RCSB PDB | cryoem | resolution: 3.32 Å | in vitro · ligands AMP Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 4 · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9KHT-1 RCSB PDB | cryoem | resolution: 4.85 Å | in vitro cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked triUb (dimeric conformation) · Polyubiquitin-C (chains D,d) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9IML-2 RCSB PDB | xray | resolution: 2.78 Å | in vitro · -173.15 °C · ligands XB7 Sertraline enhances the deubiquitinase activity of USP7 by binding to its switching loop region · Ubiquitin (chains B,D,F,H) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9GKM-3 RCSB PDB | cryoem | resolution: 3.69 Å | in vitro · ligands SY8 Structure of HECT E3 TRIP12 forming K29/K48-branched Ubiquitin chains · Polyubiquitin-B (chains D) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9GKM-2 RCSB PDB | cryoem | resolution: 3.69 Å | in vitro · ligands SY8 Structure of HECT E3 TRIP12 forming K29/K48-branched Ubiquitin chains · Polyubiquitin-C (chains C) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9GKM-1 RCSB PDB | cryoem | resolution: 3.69 Å | in vitro · ligands SY8 Structure of HECT E3 TRIP12 forming K29/K48-branched Ubiquitin chains · Ubiquitin (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-PDB-9F6G-2 RCSB PDB | xray | resolution: 1.5 Å | in vitro · -173.15 °C · pH 7 · ligands AYE Human USP30 chimera bound to Ubiquitin-PA · Polyubiquitin-B (chains B) | folded (native) · rule:ub-structures-folded · medium Experimental structure containing ubiquitin; free and bound ubiquitin keep the native fold unless the title says otherwise. |
| EV-BMRB-11505 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 Alternative structure of Ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-11547 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 the pure alternative state of ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-15047 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 2.5 Ubiquitin in 8 M Urea · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | unmapped |
| EV-BMRB-15410 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 4.6 Backbone 1H, 13C, and 15N Chemical Shift Assignments for human ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-15689 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7 Automated NMR Structure of the UBB by FAPSY · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-15866 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 6.4 CIN85 Sh3-C domain in complex with ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-16626 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 2.5 Backbone and stereospecific beta-sidechain assignments of 1H, 13C and 15N for Ubiquitin Unfolded in 8M Urea, pH2.5. · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts, coupling constants | unmapped |
| EV-BMRB-16880 BMRB | nmr_shifts | chemical_shift | in vitro · 14.85 °C · pH 6 Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-16885 BMRB | nmr_shifts | chemical_shift | in vitro · 14.85 °C · pH 6 Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-16895 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7 The solution structure of UBB+1, frameshift mutant of ubiquitin B · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-17239 BMRB | nmr_shifts | chemical_shift | in vitro · 14.85 °C · pH 6.15 NMR structure of the UBA domain of S. cerevisiae Dcn1 bound to ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-17439 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 1H, 13C and 15N backbone chemical shift assignments of ubiquitin at pH 7.2 · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-17769 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 6.5 UBIQUITIN NMR STRUCTURE · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-17919 BMRB | nmr_shifts | chemical_shift | in vitro · 26.85 °C · pH 7 Description of the structural fluctuations of proteins from structure-based calculations of residual dipolar couplings · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-18582 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 1H, 13C, 15N chemical shifts of gp78CUE bound to ubiquitin AND backbone amide shifts of ubiquitin bound to gp78CUE · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-18583 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 Solution structure of the gp78CUE/K48-Ub2 complex · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-18584 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.2 Solution structure of gp78CUE/K48-Ub2 complex · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-18610 BMRB | nmr_shifts | chemical_shift | in vitro · -15.15 °C · pH 6.5 1H, 13C and 15N assignments of Ubiquitin for both folded and denatured states at 258K and 2500 bar · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | unmapped |
| EV-BMRB-18611 BMRB | nmr_shifts | chemical_shift | in vitro · 34.85 °C · pH 4.6 Pressure & methanol-induced A-state of Ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | unmapped |
| EV-BMRB-18737 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 6 DISTINCT UBIQUITIN BINDING MODES EXHIBITED BY SH3 DOMAINS: M DETERMINANTS AND FUNCTIONAL IMPLICATIONS · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-19394 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7 Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-19399 BMRB | nmr_shifts | chemical_shift | in vitro · 26.85 °C · pH 6.5 NMR structure of EKLF(22-40)/Ubiquitin Complex · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-19406 BMRB | nmr_shifts | chemical_shift | in vitro · 22.85 °C · pH 6.8 K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-19412 BMRB | nmr_shifts | chemical_shift | in vitro · 22.85 °C · pH 6.8 K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-19447 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 6 DISTINCT UBIQUITIN BINDING MODES EXHIBITED BY SH3 DOMAINS: MOLECULAR DETERMINANTS AND FUNCTIONAL IMPLICATIONS · BMRB data: 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-25070 BMRB | nmr_shifts | chemical_shift | in vitro · -0.15 °C · pH 6.5 NMR structure of the Rad18-UBZ/ubiquitin complex · BMRB data: 1H chemical shifts, 13C chemical shifts, 15N chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-25123 BMRB | nmr_shifts | chemical_shift | in vitro · -0.15 °C 13C,15N solid-state NMR chemical shift assignments for microcrystallized Ubiquitin in MPD · BMRB data: 13C chemical shifts, 15N chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-30693 BMRB | nmr_shifts | chemical_shift | in vitro · 34.85 °C · pH 6.5 EROS3 RDC and NOE Derived Ubiquitin Ensemble · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-36759 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7.5 Encounter complex structure of E2N and Ubiquitin · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-4245 BMRB | nmr_dynamics | relaxation_rate | in vitro · 24.85 °C · pH 5 Assessing Potential Bias in the Determination of Rotational Correlation Times of Proteins by NMR Relaxation · BMRB data: order parameters, T1 relaxation values, T2 relaxation values | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-4375 BMRB | nmr_shifts | chemical_shift | in vitro · 29.85 °C · pH 2 1H, 13C and 15N Assignments of Ubiquitin Unfolded in 8M Urea, pH2 and Analysis of Chemical shift Dispersion in Unfolded Proteins · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | unmapped |
| EV-BMRB-5101 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 7 Structure and Properties of a Dimeric N-terminal Fragment of Human Ubiquitin · BMRB data: 1H chemical shifts, 13C chemical shifts, 15N chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-53268 BMRB | nmr_shifts | chemical_shift | in vitro · 24.85 °C · pH 6.4 Ubiquitin V17A/V26A retracted Intermediate · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-5387 BMRB | nmr_shifts | chemical_shift | in vitro · 19.85 °C · pH 5 Complete 1H, 13C, and 15N chemical shifts for human recombinant ubiquitin in reverse micelles · BMRB data: 1H chemical shifts, 13C chemical shifts, 15N chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-6457 BMRB | nmr_shifts | chemical_shift | in vitro · 18.85 °C · pH 6.6 Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-6466 BMRB | nmr_dynamics | relaxation_rate | in vitro · 29.85 °C Internal Dynamics of Human Ubiquitin Revealed by 13C-Relaxation Studies of Randomly Fractionally Labeled Protein · BMRB data: 13C chemical shifts, 15N chemical shifts, 1H chemical shifts, order parameters, T1 relaxation values | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-6470 BMRB | nmr_dynamics | relaxation_rate | in vitro · 26.85 °C · pH 4.7 Rotational Diffusion Anisotropy of Human Ubiquitin from 15N NMR Relaxation · BMRB data: heteronuclear NOE values, T1 relaxation values, T2 relaxation values, order parameters | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-68 BMRB | nmr_shifts | chemical_shift | in vitro · 49.85 °C · pH 4.7 Sequential 1H NMR Assignments and Secondary Structure Identification of Human Ubiquitin · BMRB data: 1H chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-BMRB-7111 BMRB | nmr_shifts | chemical_shift | in vitro · -5.15 °C · pH 4 Chemical shift assignment of multicrystalline ubiquitin using solid state MAS NMR spectroscopy · BMRB data: 13C chemical shifts, 15N chemical shifts | folded (native) · rule:ub-nmr-folded · low NMR shift or relaxation entry for ubiquitin under native conditions. |
| EV-SASBDB-SASDBR3 SASBDB | saxs_sans | radius_of_gyration: 4.45 nm | in vitro · pH 6.8 · ligands partner: E3 ubiquitin-protein ligase RNF8, partner: Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A) RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. · Polyubiquitin-C with E3 ubiquitin-protein ligase RNF8, Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A) | unmapped |
| EV-SASBDB-SASDBS3 SASBDB | saxs_sans | radius_of_gyration: 5.38 nm ± 0.21 | in vitro · pH 6.8 · ligands partner: E3 ubiquitin-protein ligase RNF8, partner: Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A), partner: Ubiquitin-conjugating enzyme E2 variant 2 RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. · Polyubiquitin-C with E3 ubiquitin-protein ligase RNF8, Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A), Ubiquitin-conjugating enzyme E2 variant 2 | unmapped |
| EV-SASBDB-SASDBT3 SASBDB | saxs_sans | radius_of_gyration: 4.28 nm | in vitro · pH 6.8 · ligands partner: E3 ubiquitin-protein ligase RNF8 mutant (L451D), partner: Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A) RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. · Polyubiquitin-C with Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A), E3 ubiquitin-protein ligase RNF8 mutant (L451D) | unmapped |
| EV-SASBDB-SASDBU3 SASBDB | saxs_sans | radius_of_gyration: 5.19 nm | in vitro · pH 6.8 · ligands partner: E3 ubiquitin-protein ligase RNF8 mutant (L451D), partner: Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A), partner: Ubiquitin-conjugating enzyme E2 variant 2 RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. · Polyubiquitin-C with Ubiquitin-conjugating enzyme E2 N double mutant (C87K, K92A), Ubiquitin-conjugating enzyme E2 variant 2, E3 ubiquitin-protein ligase RNF8 mutant (L451D) | unmapped |
| EV-SASBDB-SASDCG7 SASBDB | saxs_sans | radius_of_gyration: 2 nm ± 0.15 | in vitro · 25 °C · pH 7.4 Characterizing Protein Dynamics with Integrative Use of Bulk and Single-Molecule Techniques. · Polyubiquitin-C | folded (native) · rule:ub-saxs-folded · low SAXS of ubiquitin alone under native conditions; samples with partners are excluded. |
| EV-SASBDB-SASDCL6 SASBDB | saxs_sans | radius_of_gyration: 2.084 nm ± 0.01 | in vitro · 25 °C · pH 6 Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. · Polyubiquitin-C | folded (native) · rule:ub-saxs-folded · low SAXS of ubiquitin alone under native conditions; samples with partners are excluded. |
| EV-SASBDB-SASDJA3 SASBDB | saxs_sans | radius_of_gyration: 2.31 nm ± 0.05 | in vitro · 20 °C · pH 7.5 · ligands partner: Ubiquitin carboxyl-terminal hydrolase MINDY-2 Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. · Polyubiquitin-C with Ubiquitin carboxyl-terminal hydrolase MINDY-2 | unmapped |
| EV-SASBDB-SASDJB3 SASBDB | saxs_sans | radius_of_gyration: 2.51 nm ± 0.01 | in vitro · 20 °C · pH 7.5 · ligands partner: Ubiquitin carboxyl-terminal hydrolase C266A mutant Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. · Polyubiquitin-C with Ubiquitin carboxyl-terminal hydrolase C266A mutant | unmapped |
| EV-SASBDB-SASDJC3 SASBDB | saxs_sans | radius_of_gyration: 2.83 nm ± 0.01 | in vitro · 20 °C · pH 7.5 · ligands partner: Ubiquitin carboxyl-terminal hydrolase C266A mutant Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. · Polyubiquitin-C with Ubiquitin carboxyl-terminal hydrolase C266A mutant | unmapped |
| EV-SASBDB-SASDJD3 SASBDB | saxs_sans | radius_of_gyration: 2.88 nm | in vitro · 20 °C · pH 7.5 · ligands partner: Ubiquitin carboxyl-terminal hydrolase C266A mutant Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. · Polyubiquitin-C with Ubiquitin carboxyl-terminal hydrolase C266A mutant | unmapped |
| EV-SASBDB-SASDJE3 SASBDB | saxs_sans | radius_of_gyration: 2.8 nm ± 0.02 | in vitro · 20 °C · pH 7.5 · ligands partner: Ubiquitin carboxyl-terminal hydrolase C266A mutant Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2. · Polyubiquitin-C with Ubiquitin carboxyl-terminal hydrolase C266A mutant | unmapped |
| EV-SASBDB-SASDP34 SASBDB | saxs_sans | radius_of_gyration: 2.094 nm ± 0.371 | in vitro · 10 °C · pH 8 · ligands partner: Ubiquitin-conjugating enzyme E2 D1 (S22R, C85K, D87S) Production and characterisation of modularly deuterated UBE2D1–Ub conjugate by small angle neutron and X-ray scattering · Ubiquitin with Ubiquitin-conjugating enzyme E2 D1 (S22R, C85K, D87S) | unmapped |
| EV-SASBDB-SASDSF2 SASBDB | saxs_sans | radius_of_gyration: 1.947 nm ± 0.086 | in vitro · 20 °C · pH 7 Stretching the chains: the destabilizing impact of Cu(2+) and Zn(2+) ions on K48-linked diubiquitin. · Polyubiquitin-C | folded (native) · rule:ub-saxs-folded · low SAXS of ubiquitin alone under native conditions; samples with partners are excluded. |
| EV-SASBDB-SASDSG2 SASBDB | saxs_sans | radius_of_gyration: 1.995 nm ± 0.226 | in vitro · 20 °C · pH 7 Stretching the chains: the destabilizing impact of Cu(2+) and Zn(2+) ions on K48-linked diubiquitin. · Polyubiquitin-C | folded (native) · rule:ub-saxs-folded · low SAXS of ubiquitin alone under native conditions; samples with partners are excluded. |
| EV-SASBDB-SASDSH2 SASBDB | saxs_sans | radius_of_gyration: 1.923 nm ± 0.209 | in vitro · 20 °C · pH 7 Stretching the chains: the destabilizing impact of Cu(2+) and Zn(2+) ions on K48-linked diubiquitin. · Polyubiquitin-C | folded (native) · rule:ub-saxs-folded · low SAXS of ubiquitin alone under native conditions; samples with partners are excluded. |
| EV-AFDB-AF-P0CG48-F1 AlphaFold DB | af_prediction | plddt: 88.62 pLDDT | in silico AlphaFold DB prediction AF-P0CG48-F1 · AlphaFold Monomer v2.0 pipeline, residues 1-685 | folded (native) · rule:ub-af-folded · low AlphaFold prediction of the native fold (prediction). |
| EV-MDDB-A013P MDDB | md | trajectory: 10 ns | in silico · 26.85 °C MoDEL 1UBI · start 1UBI; Amber Parm99 | folded (native) · rule:ub-md-folded · low Simulation started from a native ubiquitin structure (prediction). |
| EV-MDDB-A0142 MDDB | md | trajectory: 10 ns | in silico · 26.85 °C MoDEL 1UBQ · start 1UBQ; Amber Parm99 | folded (native) · rule:ub-md-folded · low Simulation started from a native ubiquitin structure (prediction). |
| EV-SMASH-SMFS-000058 SMASH-BIO | force_spectroscopy | study_record | in vitro Conformational changes induced in ubiquitin by circular protein-DNA chimeras · Ubiquitin; afm smfs; experiment class: nucleic_acid_protein_interaction, receptor_ligand_adhesion, translation_transcription_replication | unmapped |
| EV-SMASH-SMFS-000098-r0 SMASH-BIO | force_spectroscopy | distance_to_transition_state: 2.7 nm | in vitro · pH 7.2 Evolution of N-terminal mechanical lability as a determinant for Type III secretion. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-000098-r1 SMASH-BIO | force_spectroscopy | distance_to_transition_state: 0.7 nm | in vitro · pH 7.2 Evolution of N-terminal mechanical lability as a determinant for Type III secretion. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-000355-r0 SMASH-BIO | force_spectroscopy | distance_to_transition_state: 2.7 nm | in vitro A Type III secretion system effector evolved to be mechanically labile and initiate unfolding from the N-terminus · Ubiquitin; force spectroscopy unspecified; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-000481 SMASH-BIO | force_spectroscopy | study_record | in vitro Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-000808 SMASH-BIO | force_spectroscopy | study_record | in vitro Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-001695-r0 SMASH-BIO | force_spectroscopy | velocity: 400 nm/s | in vitro Reconstruction of the Free Energy Profile for SUMO1 from Nonequilibrium Single-Molecule Pulling Experiments. · Ubiquitin; afm smfs; experiment class: translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-001695-r1 SMASH-BIO | force_spectroscopy | folding_free_energy: 7.5 kcal/mol | in vitro Reconstruction of the Free Energy Profile for SUMO1 from Nonequilibrium Single-Molecule Pulling Experiments. · Ubiquitin; afm smfs; experiment class: translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-001753 SMASH-BIO | force_spectroscopy | study_record | in vitro · pH 7.5 The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates. · Ubiquitin; optical tweezers; experiment class: receptor_ligand_adhesion, translation_transcription_replication | unmapped |
| EV-SMASH-SMFS-001776 SMASH-BIO | force_spectroscopy | study_record | in vitro · pH 7.6 Ubiquitin modulates 26S proteasome conformational dynamics and promotes substrate degradation. · Ubiquitin; force spectroscopy unspecified; experiment class: force_generation_motor, unfolding_protein | unmapped |
| EV-SMASH-SMFS-001849 SMASH-BIO | force_spectroscopy | study_record | in vitro Cleaning the molecular machinery of cells via proteostasis, proteolysis and endocytosis selectively, effectively, and precisely: intracellular self-defense and cellular perturbations. · Ubiquitin; optical tweezers; experiment class: nucleic_acid_protein_interaction, unfolding_protein | unmapped |
| EV-SMASH-SMFS-001915 SMASH-BIO | force_spectroscopy | study_record | in vitro Estimating the Directional Flexibility of Proteins from Equilibrium Thermal Fluctuations. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-002115 SMASH-BIO | force_spectroscopy | study_record | in vitro Role of Ligand Binding Site in Modulating the Mechanical Stability of Proteins with β-Grasp Fold. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-002175 SMASH-BIO | force_spectroscopy | study_record | in vitro The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates · Ubiquitin; optical tweezers; experiment class: receptor_ligand_adhesion, translation_transcription_replication | unmapped |
| EV-SMASH-SMFS-002196-r0 SMASH-BIO | force_spectroscopy | distance_to_transition_state: 1.5 nm | in vitro Type III secretion system effector proteins are mechanically labile. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-002196-r1 SMASH-BIO | force_spectroscopy | distance_to_transition_state: 0.4 nm | in vitro Type III secretion system effector proteins are mechanically labile. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-002197 SMASH-BIO | force_spectroscopy | study_record | in vitro Ubiquitin modulates 26S proteasome conformational dynamics and promotes substrate degradation · Ubiquitin; force spectroscopy unspecified; experiment class: force_generation_motor, unfolding_protein | unmapped |
| EV-SMASH-SMFS-002240 SMASH-BIO | force_spectroscopy | study_record | in vitro An Exactly Solvable Stochastic Kinetic Theory of Single-Molecule Force Experiments. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-002335 SMASH-BIO | force_spectroscopy | study_record | in vitro Estimating the Directional Flexibility of Proteins from Equilibrium Thermal Fluctuations · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-002496 SMASH-BIO | force_spectroscopy | study_record | in vitro Processive extrusion of polypeptide loops by a Hsp100 disaggregase. · Ubiquitin; optical tweezers; experiment class: force_generation_motor, translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-002713 SMASH-BIO | force_spectroscopy | study_record | in vitro · pH 7.4 Enzymatic biosynthesis and immobilization of polyprotein verified at the single-molecule level. · Ubiquitin; afm smfs; experiment class: force_generation_polymerization, unfolding_protein | unmapped |
| EV-SMASH-SMFS-002956 SMASH-BIO | force_spectroscopy | study_record | in vitro Translocation intermediates of ubiquitin through an α-hemolysin nanopore: implications for detection of post-translational modifications. · Ubiquitin; nanopore force; experiment class: force_generation_motor, translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-003131 SMASH-BIO | force_spectroscopy | study_record | in vitro · pH 7.4 Imaging and kinetics of the bimolecular complex formed by the tumor suppressor p53 with ubiquitin ligase COP1 as studied by atomic force microscopy and surface plasmon resonance. · Ubiquitin; afm smfs; experiment class: nucleic_acid_protein_interaction, unfolding_protein | unmapped |
| EV-SMASH-SMFS-003164 SMASH-BIO | force_spectroscopy | study_record | in vitro Loading-device effects on the protein-unfolding mechanisms using molecular-dynamic simulations. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003177 SMASH-BIO | force_spectroscopy | study_record | in vitro Mechanical Softening of a Small Ubiquitin-Related Modifier Protein Due to Temperature Induced Flexibility at the Core. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003271 SMASH-BIO | force_spectroscopy | study_record | in vitro Segmentation and the Entropic Elasticity of Modular Proteins. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003472 SMASH-BIO | force_spectroscopy | study_record | in vitro Dynamic disorder can explain non-exponential kinetics of fast protein mechanical unfolding. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003604 SMASH-BIO | force_spectroscopy | study_record | in vitro Multidomain proteins under force. · Ubiquitin; magnetic tweezers; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003687 SMASH-BIO | force_spectroscopy | study_record | in vitro Single Molecule Force Spectroscopy and Molecular Dynamics Simulations as a Combined Platform for Probing Protein Face-Specific Binding. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion | unmapped |
| EV-SMASH-SMFS-003940 SMASH-BIO | force_spectroscopy | study_record | in vitro Knotting and unknotting of a protein in single molecule experiments. · Ubiquitin; optical tweezers; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-003984 SMASH-BIO | force_spectroscopy | study_record | in vitro Nanomechanics of Protein Unfolding Outside a Generic Nanopore. · Ubiquitin; nanopore force; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-004376-r0 SMASH-BIO | force_spectroscopy | velocity: 400 nm/s | in vitro Small peptide binding stiffens the ubiquitin-like protein SUMO1. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion, translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-004412 SMASH-BIO | force_spectroscopy | study_record | in vitro The role of binding site on the mechanical unfolding mechanism of ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-004738 SMASH-BIO | force_spectroscopy | study_record | in vitro The structure of misfolded amyloidogenic dimers: computational analysis of force spectroscopy data. · Ubiquitin; afm smfs; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-005041-r0 SMASH-BIO | force_spectroscopy | unfolding_force: 130 pN | in vitro Single-molecule studies on PolySUMO proteins reveal their mechanical flexibility. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005041-r1 SMASH-BIO | force_spectroscopy | velocity: 400 nm/s | in vitro Single-molecule studies on PolySUMO proteins reveal their mechanical flexibility. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005198 SMASH-BIO | force_spectroscopy | study_record | in vitro Force-clamp analysis techniques give highest rank to stretched exponential unfolding kinetics in ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-005478-r0 SMASH-BIO | force_spectroscopy | folding_free_energy: 71 kJ/mol ± 5 | in vitro Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005536 SMASH-BIO | force_spectroscopy | study_record | in vitro · pH 7.5 Interaction of an anticancer peptide fragment of azurin with p53 and its isolated domains studied by atomic force spectroscopy. · Ubiquitin; afm smfs; experiment class: nucleic_acid_protein_interaction, receptor_ligand_adhesion, translation_transcription_replication | unmapped |
| EV-SMASH-SMFS-005571-r0 SMASH-BIO | force_spectroscopy | step_size: 30 nm | in vitro Minimum energy compact structures in force-quench polyubiquitin folding are domain swapped. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005714 SMASH-BIO | force_spectroscopy | study_record | in vitro An improved strategy for generating forces in steered molecular dynamics: the mechanical unfolding of titin, e2lip3 and ubiquitin. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005742 SMASH-BIO | force_spectroscopy | study_record | in vitro Collapse dynamics of single proteins extended by force. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005746 SMASH-BIO | force_spectroscopy | study_record | in vitro Complete all-atom hydrodynamics of protein unfolding in uniform flow. · Ubiquitin; hydrodynamic stretching; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005820 SMASH-BIO | force_spectroscopy | study_record | in vitro Interaction of p53 with Mdm2 and azurin as studied by atomic force spectroscopy. · Ubiquitin; force spectroscopy unspecified; experiment class: receptor_ligand_adhesion | unmapped |
| EV-SMASH-SMFS-005890 SMASH-BIO | force_spectroscopy | study_record | in vitro Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005968 SMASH-BIO | force_spectroscopy | study_record | in vitro Unfolding times for proteins in a force clamp. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-005973 SMASH-BIO | force_spectroscopy | study_record | in vitro Water's role in the force-induced unfolding of ubiquitin. · Ubiquitin; afm smfs; experiment class: nucleic_acid_protein_interaction, receptor_ligand_adhesion, translation_transcription_replication, unfolding_protein | unmapped |
| EV-SMASH-SMFS-006031 SMASH-BIO | force_spectroscopy | study_record | in vitro Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006111 SMASH-BIO | force_spectroscopy | study_record | in vitro Mechanics of forced unfolding of proteins. · Ubiquitin; force spectroscopy unspecified; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-006139 SMASH-BIO | force_spectroscopy | study_record | in vitro Osmolyte-induced separation of the mechanical folding phases of ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006300 SMASH-BIO | force_spectroscopy | study_record | in vitro Direct observation of markovian behavior of the mechanical unfolding of individual proteins. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006301-r0 SMASH-BIO | force_spectroscopy | persistence_length: 1.2 nm | in vitro Dissecting entropic coiling and poor solvent effects in protein collapse. · Ubiquitin; force spectroscopy unspecified; experiment class: nucleic_acid_protein_interaction, unfolding_protein | unmapped |
| EV-SMASH-SMFS-006401 SMASH-BIO | force_spectroscopy | study_record | in vitro New force replica exchange method and protein folding pathways probed by force-clamp technique. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006427 SMASH-BIO | force_spectroscopy | study_record | in vitro Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules. · Ubiquitin; force spectroscopy unspecified; experiment class: receptor_ligand_adhesion, unfolding_protein | unmapped |
| EV-SMASH-SMFS-006560 SMASH-BIO | force_spectroscopy | study_record | in vitro Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006586 SMASH-BIO | force_spectroscopy | study_record | in vitro Fluctuations of primary ubiquitin folding intermediates in a force clamp. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006594 SMASH-BIO | force_spectroscopy | study_record | in vitro Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of I27 and ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: force_generation_motor, unfolding_protein | unmapped |
| EV-SMASH-SMFS-006684 SMASH-BIO | force_spectroscopy | study_record | in vitro Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006720 SMASH-BIO | force_spectroscopy | study_record | in vitro The mechanical unfolding of ubiquitin through all-atom Monte Carlo simulation with a Go-type potential. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-006966 SMASH-BIO | force_spectroscopy | study_record | in vitro Dissecting the mechanical unfolding of ubiquitin. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007015 SMASH-BIO | force_spectroscopy | study_record | in vitro Mechanical unfolding of ubiquitin molecules. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007086 SMASH-BIO | force_spectroscopy | study_record | in vitro Topography of the free-energy landscape probed via mechanical unfolding of proteins. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007140 SMASH-BIO | force_spectroscopy | study_record | in vitro Force-clamp spectroscopy monitors the folding trajectory of a single protein. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007186 SMASH-BIO | force_spectroscopy | study_record | in vitro Reversible mechanical unfolding of single ubiquitin molecules. · Ubiquitin; force spectroscopy unspecified; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007190-r0 SMASH-BIO | force_spectroscopy | folding_free_energy: 13 kcal/mol | in vitro Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometry. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007191 SMASH-BIO | force_spectroscopy | study_record | in vitro Simultaneous atomic force microscope and fluorescence measurements of protein unfolding using a calibrated evanescent wave. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007215-r0 SMASH-BIO | force_spectroscopy | step_size: 20.3 nm ± 0.9 | in vitro The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
| EV-SMASH-SMFS-007316 SMASH-BIO | force_spectroscopy | study_record | in vitro The mechanical stability of ubiquitin is linkage dependent. · Ubiquitin; afm smfs; experiment class: unfolding_protein | unmapped |
Conflicts
No conflicts found among comparable evidence.
494 evidence items could not be compared: they lack a comparable observable type, a value, or an uncertainty. Absence of a conflict here is not agreement.
Downloads
- Protein bundle (JSON)
- Ub-folded-cif (mmCIF, observed)
- Ub-folded-pdb (PDB, observed)
- Curation file (YAML)